Index

A

adata_to_cluster_expression() (in module tangram.mapping_utils)

annotate_gene_sparsity() (in module tangram.utils)

C

compare_spatial_geneexp() (in module tangram.utils) construct_obs_plot() (in module tangram.plot_utils) convert_adata_array() (in module tangram.plot_utils)

count_cell_annotations() (in module tangram.utils) create_segment_cell_df() (in module tangram.utils) cross_val() (in module tangram.utils) cv_data_gen() (in module tangram.utils)

D

deconvolve_cell_annotations() (in module tangram.utils)

df_to_cell_types() (in module tangram.utils)

E

eval_metric() (in module tangram.utils)

G

get_matched_genes() (in module tangram.utils)

M

map_cells_to_space() (in module tangram.mapping_utils) Mapper (class in tangram.mapping_optimizer) MapperConstrained (class in tangram.mapping_optimizer) module tangram.mapping_optimizer tangram.mapping_utils tangram.plot_utils tangram.utils

O

one_hot_encoding() (in module tangram.utils)

ordered_predictions() (in module tangram.plot_utils)

P

plot_annotation_entropy() (in module tangram.plot_utils) plot_auc() (in module tangram.plot_utils) plot_cell_annotation() (in module tangram.plot_utils) plot_cell_annotation_sc() (in module tangram.plot_utils) plot_gene_sparsity() (in module tangram.plot_utils) plot_genes() (in module tangram.plot_utils)

plot_genes_sc() (in module tangram.plot_utils) plot_test_scores() (in module tangram.plot_utils) plot_training_scores() (in module tangram.plot_utils) pp_adatas() (in module tangram.mapping_utils) project_cell_annotations() (in module tangram.utils) project_genes() (in module tangram.utils)

Q

q_value() (in module tangram.plot_utils)

quick_plot_gene() (in module tangram.plot_utils)

R

read_pickle() (in module tangram.utils)

T

tangram.mapping_optimizer module tangram.mapping_utils module tangram.plot_utils module

tangram.utils module train() (tangram.mapping_optimizer.Mapper method) (tangram.mapping_optimizer.MapperConstrained method) transfer_annotations_prob() (in module tangram.utils) transfer_annotations_prob_filter() (in module tangram.utils)